Author Topic: Support for Imprecise Indels  (Read 4362 times)

farrell

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Support for Imprecise Indels
« on: May 23, 2014, 07:21:29 AM »
The latest vcf versions include support for IMPRECISE deletions and insertions. The length of a SV is determined by SVLEN in the INFO field rather than ALT and REF. The ALT field will instead have <DEL> or <INS> as a placeholder.

Could vcf2bed add support for this? It would be useful to find intersections with precise breakpoints in another vcf file.

AlexReynolds

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Re: Support for Imprecise Indels
« Reply #1 on: May 23, 2014, 09:42:27 AM »
Can you post a link to a specification document that summarizes changes, that I could look at? Thanks!